Dovletov, Gurbandurdy; Karadeniz, Utku; Lörcks, Stefan; Pauli, Josef; Gratz, Marcel; Quick, Harald H.:
Bone-Aware Generative Adversarial Network with Supervised Attention Mechanism for MRI-Based Pseudo-CT Synthesis
In: Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOIMAGING 2024) - 17th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOIMAGING 2024): Rome, Italy - Setúbal: SciTePress, 2024, Vol. 1, pp. 223 - 235
2024book article/chapter in ProceedingsClosed access
Computer ScienceFaculty of Engineering » Computer Science and Applied Cognitive Science » Computer Science » Intelligente SystemeScientific institutes » Erwin L. Hahn Institute for Magnetic Resonance Imaging (ELH)
Title in English:
Bone-Aware Generative Adversarial Network with Supervised Attention Mechanism for MRI-Based Pseudo-CT Synthesis
Author:
Dovletov, GurbandurdyUDE
LSF ID
59921
ORCID
0000-0002-2401-8745ORCID iD
Other
connected with university
;
Karadeniz, Utku;Lörcks, StefanUDE
LSF ID
59326
ORCID
0000-0003-3641-4734ORCID iD
Other
connected with university
;
Pauli, JosefUDE
GND
1160971668
LSF ID
10142
ORCID
0000-0003-0363-6410ORCID iD
Other
connected with university
;
Gratz, Marcel;Quick, Harald H.UDE
GND
124361897
LSF ID
47417
Other
connected with university
Open Access?:
Closed access
Language of text:
English
Keyword, Topic:
Deep Learning; Image-to-Image Translation; Pseudo-CT Synthesis; Attention Mechanisms; Attention U-Net; Generative Adversarial Network
Type of resource:
Text

Abstract in English:

Deep learning techniques offer the potential to learn the mapping function from MRI to CT domains, allowing the generation of synthetic CT images from MRI source data. However, these image-to-image translation methods often introduce unwanted artifacts and struggle to accurately reproduce bone structures due to the absence of bone-related information in the source data. This paper extends the recently introduced Attention U-Net with Extra Supervision (Att U-Net ES), which has shown promising improvements for the bone regions. Our proposed approach, a conditional Wasserstein GAN with Attention U-Net as the generator, leverages the network’s self-attention property while simultaneously including domain-specific knowledge (or bone awareness) in its learning process. The adversarial learning aspect of the proposed approach ensures that the attention gates capture both the overall shape and the fine-grained details of bone structures. We evaluate the proposed approach using cranial MR and CT images from the publicly available RIRE data set. Since the images are not aligned with each other, we also provide detailed information about the registration procedure. The obtained results are compared to Att U-Net ES, baseline U-Net and Attention U-Net, and their GAN extensions.